Video Tutorials

Pathobin universal smartphone microscope adapter instructions

This instruction video will guide you through the steps of assembly and setup for the original Pathobin universal smartphone microscope adapter. Buy it now on eBay http://stores.ebay.com.au/pathobin. For non-Olympus 34mm eyepieces, see our customisable eyepiece adapter. Postages discounts are available for bulk purchases. Free delivery within Australia! The fastest, most convenient way to take smartphone snaps of microscope slides. Leave the eyepiece adapter attached and rotate it out of the way to use your microscope as normal.



Pathobin universal smartphone microscope adapter

The original Pathobin universal smartphone microscope adapter. Buy it now on eBay http://stores.ebay.com.au/pathobin. The fastest, most convenient way to take smartphone snaps of microscope slides. Leave the eyepiece adapter attached and rotate it out of the way to use your microscope as normal.



How to capture 3D pathology specimens and upload models to Pathobin.com



3D pathology specimen photogrammetry

You will be able to upload 3D specimen files to www.pathobin.com and I'll provide a quick YouTube tutorial video soon, outlining the steps. It's quite fast and simple (from photographs to textured 3D model in about 15 minutes).



Universal microscope mounted slide scanning robot

This slide scanning robot prototype is designed to universally attach to any standard light microscope. The motor controller is a Raspberry Pi which can connect via wifi to a smartphone for local or remote control. Using the smartphones built in camera, the device can digitise a whole slide image (WSI). The USB inputs on the RPi allow for unique microscope control options - including an Xbox controller :) The motor mount and pulley parts are designed in Blender and OpenSCAD with 3D printing in 1.75mm ABS filament on a Up Plus 2. The entire prototype can be built for around $65 and allows anybody anywhere in the world to digitise microscope slides or remotely control and view microscope slides.



Prostate gland 3D render with embedded whole slide images

Imported prostate specimen .obj capture to Blender and used cycles render with Glass BSDF for the material. WSI embedded as texture on planes.



3D radical prostate specimen

This is a 3D model of a radical prostatectomy specimen captured using the Pathobin robot



3D printing a microscope phone adapter

3D printing a microscope phone adapter on an Up Plus 2 using standard 1.75mm ABS filament. Settings: layer thickness 0.2mm, 'Normal' mode. Time ~4hrs



Pathobin pathology case presentation tool and windows viewer

Pathobin.com new feature allows you to dynamically create presentations from cases you add via searching the pathobin website - it's great for pathology teaching, tutorial groups or meetings. Just login, go to presentation, add cases to the toolbar and drag-drop them into the windows!



Microscope Photography Stitching with Microsoft ICE

In this video I take you through the steps for image stitching iPhone panos (panoramas) to generate a large two dimensional panorama of a pathology slide for sharing on Pathobin. The same process can be applied to images captured from standard microscope cameras or other means. The iPhone panos are cropped to a rectangle to remove the black border and then stitched with Microsoft ICE (free). You will need a Windows PC (or Windows installed on Bootcamp like me). The resultant large scale image can be uploaded and shared on Pathobin to be viewed through a Google Maps viewer.



Smartphone microscope photography and stitching

You can now capture gigapixel whole slide images using the panorama function on an iPhone and stitching software such as Autopano Giga (Mac) or Microsoft ICE (PC). The resultant image can be uploaded to www.pathobin.com and viewed through our integrated Google Maps zoom viewer with links shared to Facebook and Twitter.